Protein Info for BPHYT_RS13820 in Burkholderia phytofirmans PsJN

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 40 to 175 (136 residues), 33.1 bits, see alignment E=4.3e-12 PF00015: MCPsignal" amino acids 368 to 522 (155 residues), 184.6 bits, see alignment E=1.4e-58

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to bpy:Bphyt_2793)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZJ9 at UniProt or InterPro

Protein Sequence (557 amino acids)

>BPHYT_RS13820 chemotaxis protein (Burkholderia phytofirmans PsJN)
MKAVSLGSQTGAGFVPGGEAAGKPPRGQSSRSRAVRLKGLSVKAMLRLAFAVLLVGTLLI
GVFSLTQISRLNASAQSIYDQGHVASRAAEEARGHMLRASRAQKMLLTATTAKERDELGT
DIEAGLSGLAAQLGTLQQYVDTSDAKAVDQQKKFAAAVTVWSGHLRDFVTLVKAQPLDLS
QMNWQVGTQDVSLLVETGKLEKMVDELVAQRGKAAKATIEASGFIYHSSFVMLAVATLGL
IVLAFGISEWVVRRLAGQLGGEPAYAKEIASRIAAGDLSVEIALGRKDKSSMLFALQDMQ
SGLATTVADIASSADAIATASGEISMGNLDLSQRTEQQAMALERTASSMEQLTSTVRQNA
DNAKQASTLANNASEIAEKGGAVVSRVVATMNEINDSARSIGDIIGVIEGIAFQTNILAL
NAAVEAARAGEEGRGFSVVAAEVRNLAQRSAAAAKEIKGLISTSVERVSNGSTLAQDAGQ
TMDEVVKAVKRVTDIMGEISAASSEQSAGIEEINLAVTQMDSGTQQNAALVEEATAAARS
LDDQARGLKVMVGKFRL