Protein Info for BPHYT_RS13770 in Burkholderia phytofirmans PsJN

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 17 to 477 (461 residues), 399.9 bits, see alignment E=7.7e-124 PF02321: OEP" amino acids 71 to 263 (193 residues), 60.4 bits, see alignment E=1.1e-20 amino acids 297 to 474 (178 residues), 79.9 bits, see alignment E=1.1e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2781)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZI7 at UniProt or InterPro

Protein Sequence (604 amino acids)

>BPHYT_RS13770 RND transporter (Burkholderia phytofirmans PsJN)
MQSPVQKGIAAAAVLTILLTIAGCASTGGVAPQASGIEPASLDAGNAIRAANADAQWPAL
DWWRAYNDPQLNQWIEDAQAGNPSLAAAQARVREAMSMAGVARSALSPQVNGSLSIQRQK
WADNLYYGPGPLAGEQSWNNTGTLGLSYHLDIWGKDKNAAERALDAAHASSADARAAQLE
LEGNVVRTYIEMSLNYALLDIAKATLQQQQQIVDLANRRLKGGIGTQLEVSQAETPLPEY
ERQIDEIEEKIALGRNQLAALAGKGPGAGDSIQRPSLSLQMGPAGLPSALPADLIGHRPD
VVAARWTVAAQARGIDVAKADFYPDINLLASIGGYAAMGPLFQFLKNPSHSWSAGPALSL
PILDGGRLRSQLGAASAGYDEAVERYNQSIVGALKDISDQVIRIRSLATQADDADRSVAA
ARKNYDLSREGYRRGLTDYLNVLIAQNQLLRAQEGVAKIQAERLGAHASLVTALGGGLDD
PANGPQANETLPAHGKGKAAGSAVGGLPANGAAGSSAGSISANTAVKSSAGAMSANTAVK
SSAGSMPANTAAKPSAGAMSVNTAANSNTLSTSPTTPANSRAGSIPANASASTNAAPRSA
KSGS