Protein Info for BPHYT_RS13725 in Burkholderia phytofirmans PsJN

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 PF12146: Hydrolase_4" amino acids 27 to 239 (213 residues), 51.5 bits, see alignment E=1.8e-17 PF00561: Abhydrolase_1" amino acids 27 to 133 (107 residues), 70.2 bits, see alignment E=4.4e-23 PF12697: Abhydrolase_6" amino acids 27 to 264 (238 residues), 73.5 bits, see alignment E=8e-24 PF00975: Thioesterase" amino acids 50 to 118 (69 residues), 27.7 bits, see alignment E=5.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2771)

Predicted SEED Role

"PROBABLE HYDROLASE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZH7 at UniProt or InterPro

Protein Sequence (277 amino acids)

>BPHYT_RS13725 alpha/beta hydrolase (Burkholderia phytofirmans PsJN)
MILTVQGKPAYAYTGGKAFDASLPTAVFIHGAEHDHSVWALQTRYFAHHGFSVLAVDLPG
HCRSAGPALTTVPAMADWLAALLDAAGVRRAFVAGHSMGSLIALDFAGRYPERATHLALL
ATAIPMAVSDALLDAALHREPEAIGMVNQWSHSTFAAKPSCPGPGFWLHGMNQRLMERVS
ASGEPNLFHTDFAACNSYADGLARAAQVRCAARLIVGRRDAMTPPRAAKALAGALAQAGV
PVDTVTLDAGHALMSEQPDATLDALFSFATRAPREAG