Protein Info for BPHYT_RS13455 in Burkholderia phytofirmans PsJN

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 599 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 273 to 298 (26 residues), see Phobius details PF02743: dCache_1" amino acids 69 to 257 (189 residues), 87.5 bits, see alignment E=1.5e-28 PF00672: HAMP" amino acids 299 to 345 (47 residues), 42.4 bits, see alignment 1.1e-14 PF00015: MCPsignal" amino acids 410 to 564 (155 residues), 178.5 bits, see alignment E=1.7e-56

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to bpy:Bphyt_2718)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SY33 at UniProt or InterPro

Protein Sequence (599 amino acids)

>BPHYT_RS13455 methyl-accepting chemotaxis protein (Burkholderia phytofirmans PsJN)
MFTSIRARIVALCVAIVVVALAANAVLNYVVANSYNADAIDSSLSAVESGHAGGIGDWVA
ANSQMINSLQDAVLQADPSAALKQIAAAGKFTNVYVGYADKTAKFSDPTGIPPDYDPTGR
PWYRQAAEAGKPVVTPPYVDVGTGKLVVAFAAPVVRDGAVKGVVSGDVAMDSVIANVKAI
HPTPASFGMLIDASGHIVAHPDPKLTLKPVSDVAPGLTGDKLAALFSAERPLEMDVNGST
KLLRAQAIPGTDWYAVVALDKAEATAGMRSLLTASVIALIVIAGIAAAIVAAVTAVSFQR
LSKVRDAMDAIGSGEGDLTQRLPAVGNDEVAQIARSFNTFIDKLSHVMRQIRDASESVRV
AANEIAAGNVDLSGRTESAAASLQQTAASMEEITSTVTQSASAAKQADGTAVSASQVASR
GGVVISEVIATMGEIQHASVKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV
AGEVRSLAQRSAQAAKEIKALIESTVASVTSGSDQVRQAGETMTEIVSNVGNVTTIISEI
TQAANEQTRGIQEVNRAVSQLDEMVQQNAALVEESTAAAAALQSQAVSLASAVTQFKLD