Protein Info for BPHYT_RS13430 in Burkholderia phytofirmans PsJN

Annotation: radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 TIGR04043: radical SAM protein, MSMEG_0568 family" amino acids 2 to 355 (354 residues), 598.4 bits, see alignment E=2e-184 PF04055: Radical_SAM" amino acids 125 to 279 (155 residues), 47.2 bits, see alignment E=1.5e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2714)

Predicted SEED Role

"Biotin synthase-related enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SY29 at UniProt or InterPro

Protein Sequence (356 amino acids)

>BPHYT_RS13430 radical SAM protein (Burkholderia phytofirmans PsJN)
MTELQSAGLRLVSPDAGAASRRGGAGPSDHKAVTVDGVTIMVPVHTSTAWHSPFVAQTPD
ASGSSALLRGTIPIANISFPKAPRFYGMQTLDGVPYSHIAALHSADVLATTVLQTCIRYE
SRRKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPPTPDRGAQ
ILCESAFAIKAAVDLPIQAQCEPPDDDRWFARMKASGIDTLGMHLEVVTPALRERIMPGK
ASVPLSRYMEAFKSAVAVFGRGQVSTYILAGLGDSAAAILAMSRELIELGVYPFVVPFVP
ISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAMRSSDIKAGCGKCGACSSLSSYEE