Protein Info for BPHYT_RS13420 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 TIGR04049: AIR synthase-related protein, sll0787 family" amino acids 4 to 320 (317 residues), 485.6 bits, see alignment E=2.9e-150 PF00586: AIRS" amino acids 47 to 152 (106 residues), 74.1 bits, see alignment E=1.2e-24 PF02769: AIRS_C" amino acids 201 to 302 (102 residues), 55.6 bits, see alignment E=7.2e-19

Best Hits

KEGG orthology group: K07123, (no description) (inferred from 100% identity to bpy:Bphyt_2712)

Predicted SEED Role

"Selenophosphate synthetase-related protein MJ0640"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SY27 at UniProt or InterPro

Protein Sequence (327 amino acids)

>BPHYT_RS13420 hypothetical protein (Burkholderia phytofirmans PsJN)
MSVADLVASLRESRGFRHKTDIVDVVGALAKRLPHGTHDLAQAVALGDDCAALADGDGYL
LFAIEGMVSDFVSAMPWFAGYSSVMVNVSDIYAMGGRPLAVVDALWSPGIGAADEVLAGM
AAASVAYGVPIVGGHTNTRSDAAQLAVSIIGRAKALLSSFNAKPGDSLMMAIDLRGHFEE
PYPFWNASVDAPAGRLRGDLELLPQLAESGLCDAAKDISMAGTLGTALMLLECSRVGARI
DLARIPKPDGVALERWVTAFPSFGYLLSVRPEHVDAVQALFDARALSCAVIGSVDATSQV
VVQQEDDAAMLWDFQREPFIVGKGGVT