Protein Info for BPHYT_RS13335 in Burkholderia phytofirmans PsJN

Annotation: benzoyl-CoA oxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 TIGR03224: benzoyl-CoA oxygenase/reductase, BoxA protein" amino acids 9 to 413 (405 residues), 754.6 bits, see alignment E=1.3e-231 PF13237: Fer4_10" amino acids 14 to 60 (47 residues), 30.5 bits, see alignment 1e-10 PF00037: Fer4" amino acids 15 to 36 (22 residues), 30.6 bits, see alignment (E = 7.4e-11) amino acids 43 to 65 (23 residues), 22 bits, see alignment (E = 4e-08) PF13187: Fer4_9" amino acids 20 to 64 (45 residues), 30.6 bits, see alignment 1e-10 PF12838: Fer4_7" amino acids 20 to 63 (44 residues), 29.9 bits, see alignment 2.3e-10 PF00175: NAD_binding_1" amino acids 274 to 380 (107 residues), 55.8 bits, see alignment E=2.3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2694)

Predicted SEED Role

"Benzoyl-CoA oxygenase component A" in subsystem Benzoate transport and degradation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SY10 at UniProt or InterPro

Protein Sequence (413 amino acids)

>BPHYT_RS13335 benzoyl-CoA oxygenase (Burkholderia phytofirmans PsJN)
MNGPVSIEVLRQHLIDPEICIRCNTCEETCPVDAITHDDNNYVVKAEICNGCMACVPPCP
TGAIDNWRTVLKADAYPIEEQFTWDVLPEQNTMAVPAADELPGAGASGDTVAEASGIEVD
TVRGSVVPPWSAAKPYVNLYTHKEPTSATVVGNYRLTDGSTDSDIHHIVLDFGSMPFPVL
EGQSIGILPPGTAADGRAHHARQYSIASPRDGERPGYNNVSLTVKRVSQQHGDSLDGVCS
NYLCDLKKGDVVKVIGPFGGTFLMPNHPNSHLLMICTGTGSAPMRAMTEYRRRRRLKGAT
GKLMLFFGARTKEELPYFGPLTNLPKDFIDTNLAFSRTPGQPKRYVQDAMRERAVDVAHM
LKDDNTHIYVCGLKGMEDGVLQALKEIGERHQLDWEALWVKLKKEGRLHLETY