Protein Info for BPHYT_RS13190 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details amino acids 193 to 215 (23 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details PF00892: EamA" amino acids 27 to 155 (129 residues), 55.4 bits, see alignment E=3.7e-19 amino acids 166 to 299 (134 residues), 55 bits, see alignment E=5.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2664)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXY0 at UniProt or InterPro

Protein Sequence (309 amino acids)

>BPHYT_RS13190 membrane protein (Burkholderia phytofirmans PsJN)
MSLQFLNRFSRGLPIRLPQSRNGQVALALAVVYLVWGSTYLAVHVALGSFPPLLLSGMRN
LFAGVGLFIFAARRNPVWPSAAEIRNAGLVGTMLVGLSSGMLAYGMRTVGTGTAAVMVAT
VPLFATVIAAVAGRKIGRGEWFAVGLGLVGIAILSHGDSAPGSAGGSLAILCGALFWAGG
AHLAGRLKLPSDLFLSTSLQIGLGGAMSTLVAWVSGERMLEVHFLPVLAFIYLMLIGTMA
AYVAYGFLIRHTSPIIASSCMYVNPVVAVALGALLLGEPVTRSTVVATVVILASVGLSFW
FDYRKKGLA