Protein Info for BPHYT_RS13150 in Burkholderia phytofirmans PsJN
Annotation: hisitidine kinase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 33% identical to LIAR_BACSU: Transcriptional regulatory protein LiaR (liaR) from Bacillus subtilis (strain 168)
KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2656)MetaCyc: 33% identical to DNA-binding transcriptional dual regulator NarL (Escherichia coli K-12 substr. MG1655)
Predicted SEED Role
"DNA-binding response regulator, LuxR family"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See B2SXX2 at UniProt or InterPro
Protein Sequence (210 amino acids)
>BPHYT_RS13150 hisitidine kinase (Burkholderia phytofirmans PsJN) MIRVLIADDHAIVRGGFKQFVADEPDMCVAAEAATGDQTISLVREQAFDVVLLDIAMPDK NGIDTLRVIKQVRPEQGVLILSGYPESQYAINLLRAGANGYLNKDCEPEEIVRAIRAVAR GHRYLSEAVADTLADNLDKPAAGRPHEALSEREFQIFCKLAAGQIPTDIAEELHLSVKTV STYRARVLEKMRLANNADLTYYAIKNGLIE