Protein Info for BPHYT_RS13005 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 59 to 75 (17 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2627)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5S0 at UniProt or InterPro

Protein Sequence (268 amino acids)

>BPHYT_RS13005 membrane protein (Burkholderia phytofirmans PsJN)
MLALKLALVPAFLAALTVAGRVWGPSVAGWLAGLPVVAGPIVLLLALERGPSFAAQASAA
SIAAIAASEAFNFAYAWTCRRVAWPLALSVGMVGWVGVAFVLTQLPVGLAWAVVAACVAV
AVSQSGLPRVNGHVPAARLGLGDLAVRMLAGALLTVAVTTLSASMGATWSGLLSVFPLLG
IVLAVSAQRAHGPDFVALLMRGMVIGRASFAAFFAVTATMLPQYGVWISFACAFAVSVIV
QGATKRMLGARRPVQAVSRELAEQQSTD