Protein Info for BPHYT_RS12825 in Burkholderia phytofirmans PsJN

Annotation: phasin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF09361: Phasin_2" amino acids 7 to 106 (100 residues), 105.7 bits, see alignment E=6.5e-35 TIGR01841: phasin family protein" amino acids 27 to 114 (88 residues), 101.1 bits, see alignment E=1.8e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2588)

Predicted SEED Role

"granule-associated protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5N1 at UniProt or InterPro

Protein Sequence (190 amino acids)

>BPHYT_RS12825 phasin family protein (Burkholderia phytofirmans PsJN)
MTLLTPEQFAAAQKANFETLFGLTTKAFEGVEKLVELNLQVVKSTLAESQENAQRALSVK
DAQELLALQASLAQPVAEKALSYGRHVYEIVSATQGEFTRVAEAQFEEQNRKVQSLVENV
AKNAPAGSETAVAVLKSAITAANTTYDTVHKATKQAVEIAESNFNAAATAASKAASQAAA
QASRSAKKAV