Protein Info for BPHYT_RS12670 in Burkholderia phytofirmans PsJN

Annotation: cell division protein FtsB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF04977: DivIC" amino acids 11 to 89 (79 residues), 84.7 bits, see alignment E=1.6e-28

Best Hits

KEGG orthology group: K05589, cell division protein FtsB (inferred from 100% identity to bpy:Bphyt_2559)

Predicted SEED Role

"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXU8 at UniProt or InterPro

Protein Sequence (145 amino acids)

>BPHYT_RS12670 cell division protein FtsB (Burkholderia phytofirmans PsJN)
MRLVTAVLIVLLALIQYPLWWGHGGWLRVHELQQQLAQQVQKNADSKLRNERIQGEVQDL
QNGTAAVEERARYEMGMVKDGEVFVQFVSPNAPLPSANTPSVTTSTRGEMSAAPLHVVPN
PESRAKPDRKHGSKAAAAKDKKPAH