Protein Info for BPHYT_RS12510 in Burkholderia phytofirmans PsJN

Annotation: RNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 782 PF09371: Tex_N" amino acids 8 to 81 (74 residues), 107.4 bits, see alignment E=8.3e-35 PF22706: Tex_central_region" amino acids 136 to 314 (179 residues), 240 bits, see alignment E=6e-75 PF16921: Tex_YqgF" amino acids 330 to 456 (127 residues), 178.5 bits, see alignment E=2.5e-56 PF12836: HHH_3" amino acids 496 to 560 (65 residues), 98.4 bits, see alignment E=7.2e-32 PF17674: HHH_9" amino acids 566 to 635 (70 residues), 80.8 bits, see alignment E=3.8e-26 PF23459: S1_RRP5" amino acids 653 to 715 (63 residues), 30.3 bits, see alignment 1.8e-10 PF00575: S1" amino acids 654 to 725 (72 residues), 74 bits, see alignment E=3.7e-24

Best Hits

Swiss-Prot: 64% identical to TEX_BORPE: Protein tex (tex) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K06959, uncharacterized protein (inferred from 100% identity to bpy:Bphyt_2527)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXR6 at UniProt or InterPro

Protein Sequence (782 amino acids)

>BPHYT_RS12510 RNA-binding protein (Burkholderia phytofirmans PsJN)
MTETVALKIVQRIAAELSVQPRQVAAAVQLLDEGATVPFIARYRKEVTDNLDDTQLRNLE
ERLLYLRELEDRRAAIIASIDEQGKLTDELRTAIEGADSKQVLEDLYLPYKPKRRTRAQI
AREAGLQPLADALLANPLLDPQTEAAAYVDAEKGVADLKAALDGARDILSEQFGETAELL
GKLRDYLFNQGVVSSKVVEGKENAEEEKFRDYYDYSETIRTVPSHRALALFRGRNAGVLM
VKLGLGEELDAQVPHPGEALIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLT
NLRDEAEHEAIRVFARNLKDLLLAAPAGPKAVIGLDPGMRTGVKVAVVDRTGKVLATDVI
YPHEPRRDWDGSIAKLARICAQTQAELISIGNGTASRETDKLASELIARHPEFKLQKIVV
SEAGASVYSASELAAKEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
QRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSREH
LRKVPRLGDKTFEQAAGFLRINNGENPLDRSSVHPEAYPVVERMLAKISKHVGEVLGNRD
ALRGLSPAEFVDDRFGLPTVRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLE
GVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVKRQRI
ALTMRMDDEVGVAAARSGGGAQQDRGGSGRSGGGGRGAQQQRSREPEAGGAMAAAFAKLK
QK