Protein Info for BPHYT_RS12100 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 770 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 30 to 770 (741 residues), 903.8 bits, see alignment E=4.6e-276 PF07244: POTRA" amino acids 31 to 92 (62 residues), 30.9 bits, see alignment 7.4e-11 amino acids 99 to 178 (80 residues), 51.3 bits, see alignment E=3.1e-17 amino acids 182 to 269 (88 residues), 63.8 bits, see alignment E=4.1e-21 amino acids 272 to 349 (78 residues), 58.8 bits, see alignment E=1.4e-19 amino acids 353 to 427 (75 residues), 52.4 bits, see alignment E=1.4e-17 PF01103: Omp85" amino acids 454 to 770 (317 residues), 274.8 bits, see alignment E=2.6e-85

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 100% identity to bpy:Bphyt_2447)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5I6 at UniProt or InterPro

Protein Sequence (770 amino acids)

>BPHYT_RS12100 membrane protein (Burkholderia phytofirmans PsJN)
MFKPHRFVPKTVIAAAFAAHGLVAHATTPFVVQDIRIEGLQRVEPGTVFAYLPIKQGDTF
SDDKASEAIRALYATGFFNDVKIATEGNVVIVQVLERPAIGTIDFAGIHEFDKENLTKAL
RAVGLSQGRYYDKALVDKAEQELKRQYLTRGYYAAEVTTTITPIDRNRVSVLFAVAEGPS
AKIRQINFIGNKAFSTGTLRDEMQLSTPNWFSWYTKNDLYAKDKLTGDLENVRSYYLNRG
YLEFNIESTQVSITPDKKDMYLTVTLHEGEPYTISNIKLAGNLLDREPELAKLIKIKPGD
RFSAEKLQATTKAIVDKLGEYGYAFATVNAQPQIDQANHKVDLTLQVDPSRRVYVRRINV
VGNTRTRDEVVRREMRQLESSWFDSNRLALSKDRINRLGYFTDVDVTTVPVEGTPDQVDV
DVKVAEKPTGAITLGAGFSSTDKVVLSAGVSQDNVFGSGTSLSVNVNTAKTYRTLTVTQV
DPYFTVDGIKRITDVYYRTYQPLYYSTDSSFKIVTIGGDLKFGIPFSEVDTVYFGAGLEQ
NQLDVDANTPASYRQYVQDFGRVSNNVPITVGWSRDARDSALVPSRGYFAQANAEYGTPI
GSTQYYKADINAQYYYSFARGFVLGFNFQGGYGKGMGGKPYPIFKNYYAGGIGSVRGYEP
SSLGPRDATTNDPIGGSKLLVGNIELTFPLPGTGYDRTLRVFTFLDAGNVWADASSAATS
TGANGLRYGYGIGLAWISPIGPLKLSLGFPLVKHTGDQYQKFQFQIGTAF