Protein Info for BPHYT_RS12025 in Burkholderia phytofirmans PsJN

Annotation: multidrug DMT transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 77 to 110 (34 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 192 to 215 (24 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details PF00892: EamA" amino acids 3 to 137 (135 residues), 34.2 bits, see alignment E=1.5e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2432)

Predicted SEED Role

"FIG006442: Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5H1 at UniProt or InterPro

Protein Sequence (325 amino acids)

>BPHYT_RS12025 multidrug DMT transporter permease (Burkholderia phytofirmans PsJN)
MQRGVAYGVMAGALWGMVFLVPRVLPDFSPLLLSAGRYTMYGIVSLAAALPMARSLVKRL
TREDLGALVKLALAGNLLYYLLLTAAVHLIGIAPASLIVGVLPVTVTLLGRRDHGAVPLA
RLAWPLAMVMAGIVCINIDVFTVVDSTPVSVVTKLIGLACAVGALGCWTWFAVENARYLQ
RQTHFSGNEWSVLWGVVTGALGAALWLVIAVLPAGGPQGELADGRWHTFWMLNLGLAIGA
SWLGNGLWNAASKRLPLTLSGQMIVFETLFALLYAFIYDQRLPRPLELAAILLLVAGVCW
SVRQHADDDTSAPAGIEEKPQVSAP