Protein Info for BPHYT_RS11960 in Burkholderia phytofirmans PsJN

Annotation: MarR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 22 to 477 (456 residues), 387.3 bits, see alignment E=5.1e-120 PF02321: OEP" amino acids 75 to 266 (192 residues), 71.7 bits, see alignment E=3.6e-24 amino acids 290 to 475 (186 residues), 75 bits, see alignment E=3.4e-25

Best Hits

KEGG orthology group: None (inferred from 83% identity to bph:Bphy_4022)

Predicted SEED Role

"Outer membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>BPHYT_RS11960 MarR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MSIQSNARRRASGAMKSALSLIFTAALSACVNYAGIHGEAKTADPQQFATRQSLPAEQGH
WPAANWADQFGDAQLSSLISEALSSNPTLDQARARVAAAFAYTETAKASTMPRVDASYSL
TREQLSNTTFLPPPFGGSWQTENRGVLGASFDLDLWGKNREALKAAISQSQASQADAEVV
KLTLTTSIARAYNQLARLYVLRDIAQKEITQRERIDRITAGRIATGLDTEVERKTVHANL
ATSRATLKSLDGRILTTRYQIAALLGAGPDRGLQISRPTLGLGDEVRLPDNLPADLVSRR
PEIVAARWRIDAMAHDVKEAKAEFYPDINLSAAIGLDAFGFGRFLTAASRTASVGPAIHL
PIFDAGELRAQLKGRYADFDYAVAAYNQTLVTALNEVATQLADVHSTDAQLVDAQAAQEA
ARQADELALIQYKAGLTNQLTVLNVDLNALSADQAVANLRMNRRDQQIALASALGGGFVD
EPNAAPAAAPRANATAPGAPVVAVR