Protein Info for BPHYT_RS11715 in Burkholderia phytofirmans PsJN

Annotation: allantoin permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 101 to 126 (26 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 240 to 265 (26 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 355 to 377 (23 residues), see Phobius details amino acids 402 to 423 (22 residues), see Phobius details amino acids 435 to 452 (18 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 19 to 440 (422 residues), 164.2 bits, see alignment E=2.5e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2364)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5A1 at UniProt or InterPro

Protein Sequence (475 amino acids)

>BPHYT_RS11715 allantoin permease (Burkholderia phytofirmans PsJN)
MSTSEHNAPALIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQIFHLNL
LWGIVAIVVGQAVGGVLMALHSAQGPQMGIPQMIQSRAQFGSWGALLVTVIAGVMYVGFF
ASNIVLAGKSLHGIEKSIPVPVGIVIGALGSGLIGIIGYRIIHILTRIGTWVLGIGIVVG
FGYILTHIATGDFLTRGGFNIAGWLATVSLSALWQIAFAPYVSDYSRYLPANVRVASTFW
ATYLGCTIGSTLAFVFGAVAVLAVAPGADAMDAVKQATGPLGLPMLVLFLLSVISHNALN
LYGAVLAAITSLQTFAYRWIPTAKARAVLSIAILLACCYGAIGASTNFVGNLVDLVLALL
VVLVPWTAINLIDFYVIHKGKYDIQSIFQVDGGIYGRFNPQALIAYGIGIVVQIPFMNTP
MYAGPVPKYLDGADLSWVIGLLLTSPLYYWLASRDTDYRRRQTAAGVTGCAARQS