Protein Info for BPHYT_RS11630 in Burkholderia phytofirmans PsJN

Annotation: alkylhydroperoxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF02627: CMD" amino acids 12 to 93 (82 residues), 65.6 bits, see alignment E=1.6e-22 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 35 to 78 (44 residues), 52.7 bits, see alignment E=1.2e-18

Best Hits

Swiss-Prot: 42% identical to YDFG_BACSU: Uncharacterized protein YdfG (ydfG) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2344)

Predicted SEED Role

"4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T582 at UniProt or InterPro

Protein Sequence (159 amino acids)

>BPHYT_RS11630 alkylhydroperoxidase (Burkholderia phytofirmans PsJN)
MTQRINYVQQSPELFKKFFELSNLLKDSTIEESIRDLVSIRASQLNGCGFCLDMHVKEAR
LHGERELRVHHLATWRESTLFAPRERAALAWTEVLTRLPEHGVPDELYERVRTQFSEKEL
SDLTFEVMAINGWNRANVAFKTVPGSSDKAFGLDKANLV