Protein Info for BPHYT_RS11510 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 PF00005: ABC_tran" amino acids 41 to 185 (145 residues), 118.5 bits, see alignment E=3.6e-38 amino acids 289 to 445 (157 residues), 38 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: K02056, simple sugar transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 100% identity to bpy:Bphyt_2321)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T559 at UniProt or InterPro

Protein Sequence (533 amino acids)

>BPHYT_RS11510 ABC transporter (Burkholderia phytofirmans PsJN)
MSDSSYSDGAAAQPADRPEQAAPRLMLQSITKQYPAVRANDDVTLIVAPGEIHAVLGENG
AGKSTLMKIIYGAVRPDAGEIRWEGQTVEIANPAAARKLGIGMVFQHFSLFETLTVGENI
ALALDEPFDLKTLSRRIREVSADYGLDIDPQRHVHSLTVGERQRVEIVRCLLQNPRLLIM
DEPTSVLTPQAVRKLFETLRRLAAEGCSILYISHKLDEIQELCDTATVMRGGRVTGHVKP
KGETHASLAQLMVGHSLPDYTRREHNPGAVLLDVKRLSVESDDPFGTSLHDVSFGVHAGE
IFGIAGVSGNGQAELLSALSGEKRGVRADAVTICGKAAGRLGAGGRRALGFGFVPEERLG
RGAVPAMTLSENALLTAHRQQMVNSGWIKAGAMRAFAKRCIDAFDVRCGGSEALAQSLSG
GNLQKYIMGREILQAPKVLVVAQPTWGVDVGAAAFIRQQLLDLSARGVAILVISEELEEL
FDICDRIAVLAGGRLSPVRGTGATNAEEIGRWMAGLFGDREGSAPSAEQPAHA