Protein Info for BPHYT_RS11140 in Burkholderia phytofirmans PsJN

Annotation: major facilitator transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 44 to 67 (24 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 155 to 155 (1 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 223 to 241 (19 residues), see Phobius details amino acids 262 to 286 (25 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 327 to 346 (20 residues), see Phobius details amino acids 352 to 372 (21 residues), see Phobius details amino acids 392 to 415 (24 residues), see Phobius details amino acids 424 to 444 (21 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 13 to 407 (395 residues), 239.7 bits, see alignment E=3.1e-75 PF07690: MFS_1" amino acids 15 to 404 (390 residues), 159.8 bits, see alignment E=1.4e-50 amino acids 268 to 458 (191 residues), 49.7 bits, see alignment E=3.9e-17 PF05977: MFS_3" amino acids 19 to 244 (226 residues), 30.1 bits, see alignment E=2.9e-11 PF00083: Sugar_tr" amino acids 48 to 110 (63 residues), 25.4 bits, see alignment E=1e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2247)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T4Y5 at UniProt or InterPro

Protein Sequence (466 amino acids)

>BPHYT_RS11140 major facilitator transporter (Burkholderia phytofirmans PsJN)
MTKDSSQTALLWIVAAGFFMQSLDTTIVNTALPSIANSLYVAPLAMQPIVVAYTLTMAML
TPASGWLADRFGTRRVYFAAILVFVLGSICCASAHTLGQLVMARVLQGVGGSMLLPIGRL
AVLRSVTGDQYVAALAFISVAGQLGPIAGPTLGGWFVQAITWHWIFLINVPIGAVGLYAV
QRFLPSHGEAKAPPFDFVGCGLLSLCMIAFSLAVDSPMPTHRVAWSVALFALAAISALAY
IPHARRRVNPLFKLSLFREPNFSVGLIGNLVCRIGSSAVPFLVPLLLQLQLGYSPLHSGL
MMLPAALAGTVAKRWIAPLVRRYGYDTFLLINTIVVGSSIVAFALITRGTPLVVEIAILA
VFGAANSMQFAAMNSVTLKGLSHEDAGSGNSLFSMVQMLAIGLGVSIGGGLVNLFSAQAG
SAALGFRLAFVCVGVITLVSAWVFRHLDEAPASRPVQGQATQGAGR