Protein Info for BPHYT_RS11110 in Burkholderia phytofirmans PsJN

Annotation: chemotaxis protein CheY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 PF00989: PAS" amino acids 35 to 141 (107 residues), 34.7 bits, see alignment E=6.3e-12 amino acids 171 to 270 (100 residues), 44.1 bits, see alignment E=7.5e-15 PF08448: PAS_4" amino acids 38 to 148 (111 residues), 24.7 bits, see alignment E=9e-09 amino acids 171 to 276 (106 residues), 38.9 bits, see alignment E=3.7e-13 TIGR00229: PAS domain S-box protein" amino acids 41 to 153 (113 residues), 54.1 bits, see alignment E=8.2e-19 amino acids 154 to 279 (126 residues), 80.1 bits, see alignment E=7.6e-27 PF13426: PAS_9" amino acids 43 to 144 (102 residues), 54.7 bits, see alignment E=4.2e-18 amino acids 171 to 273 (103 residues), 62.6 bits, see alignment E=1.5e-20 PF08447: PAS_3" amino acids 182 to 267 (86 residues), 33.2 bits, see alignment E=2.1e-11 PF00512: HisKA" amino acids 287 to 350 (64 residues), 51 bits, see alignment E=5.1e-17 PF02518: HATPase_c" amino acids 398 to 510 (113 residues), 87.9 bits, see alignment E=2.5e-28 PF00072: Response_reg" amino acids 533 to 638 (106 residues), 64.8 bits, see alignment E=3e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2241)

Predicted SEED Role

"Two-component hybrid sensor and regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T4X9 at UniProt or InterPro

Protein Sequence (657 amino acids)

>BPHYT_RS11110 chemotaxis protein CheY (Burkholderia phytofirmans PsJN)
MKQLDVPSAGENGKPAKVPAAARSRASVEIDYWALLEAIEDYAIFLLDPSGRIVSCNGGG
YKLTGYSEQEIVGEHFSRFYTEEAVARDWPAYELQQASLTGRFEDTGWRKRKDGTIFWSN
VVITSMRDDAGILTGFAKITRDLSAQREYVEALRQSEERFRLLVDCVKDYAIFMLDPQGY
VVSWNSGAARIKGYTREEIVGRHFSTFYVPEEAAAGKPARELAIARQLGHVEDEGWRVRK
DGTTFWANVVITAVHDESNRLRGFAKVTRDLTERRQREELERSGERMRQFLATLAHELRN
PLAPVRNAIGVMQLETGVSPTLARSRDLIDRQVTHLTRLVDDLLDVGRIMSNKVELRLGR
VDLAEVMGRAIEAARPFTDAHEQRVVQHMPDEPVIVRGDMTRLVQVLQNLLHNAAKFSPV
GSAIEVAARIDYHMAVLEVRDAGCGIPVRSLDRIFELFAQEKDGQNAGEGGLGIGLTLCK
SLVELHGGSIIASSEGPGCGSTFTLSLPLAAALPEATGDEANAADTEVGPLRILLVDDNR
DSADSLAMLLELKGHEVRIAYEGEQAVQVAPRFVPHLAVIDIAMPKMDGYETIAALRAMP
ELAHTLYAAMTGFGQASDRERTREAGFHAHLVKPVALELFDALLADVEARRSERGPG