Protein Info for BPHYT_RS11075 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details amino acids 46 to 52 (7 residues), see Phobius details transmembrane" amino acids 29 to 45 (17 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 147 to 173 (27 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 302 to 323 (22 residues), see Phobius details amino acids 343 to 369 (27 residues), see Phobius details amino acids 381 to 402 (22 residues), see Phobius details amino acids 409 to 426 (18 residues), see Phobius details amino acids 432 to 449 (18 residues), see Phobius details amino acids 468 to 488 (21 residues), see Phobius details amino acids 509 to 530 (22 residues), see Phobius details amino acids 839 to 860 (22 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 33 to 315 (283 residues), 48 bits, see alignment E=1.3e-16 PF09924: LPG_synthase_C" amino acids 553 to 841 (289 residues), 288.1 bits, see alignment E=7.1e-90

Best Hits

KEGG orthology group: K14205, phosphatidylglycerol lysyltransferase [EC: 2.3.2.3] (inferred from 100% identity to bpy:Bphyt_2233)

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.2.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T4X1 at UniProt or InterPro

Protein Sequence (864 amino acids)

>BPHYT_RS11075 membrane protein (Burkholderia phytofirmans PsJN)
MFHRYNYKFDRLGAMFDRASKTLGNRALLSPLLALGIGALLLVVLQHLSQAVDYRSVMRE
LRRLTAGEWSAALGATALSYVALVGRDAVGLRYLGAAVPRVALWIGATAGSALGNATGFG
ALTGGAVRARVYSVASVTPAQIGRMTVFTSVSLALALVLMTALGMVGVAGTLAPMLHLEP
LTLRWTGVALLAALASAAAACRGETRPVRTRWQWLSFDIPARRDLLAQVALAVLDVVAAG
LALWALLPHADVSFVTFITVYAAAMLLGMIGHTPGGVGVFEAAMVFTLNGSVQTHQMVAA
LLAYRAIYFGVPLIVSAALLAGFEGRALKSRLPLQHAAAASKLAPLFLSLVTFVVGGMLV
ISSATPAFWQRIHMLRNVLPLWVLESSQMLCSVLGVLLLFVARGLLRRLDAAWWMTLLLA
VLSLALSLTKGLAFVEAGVLGMLVVLLLSTRRRFNRHSSLFAERFTAGWLVSVAMVLMLA
TWVMLFAFRDVPYTRDLWWQFAFDERAPRALRATLAASLFAATFSFWQLLRPAPGRFVKP
APQDLHDAARIVRAQERSDAGLALMGDKSFLFSESRKAFLMYAKYGRTWAALHDPVGPRE
EWAGLIGKFVALAHTHGGRAAFYQVRANALPLYLDAGLTLMKLGEEAHVVLDDFDLKGSH
RAHLRYALKRGERDGFTVEVIDQANVPASLDTLREISDGWLDSRDAREKSFSVAAFTDEY
LAAQSVMLVRQNGEPAAFVTFMTTDMNTEATVGVMRHVESASPYAMEYLFTQLALHLKQA
GFRSLSLGIAPLSGMQPTPLASRWHRFAGIVWRFGGRFYNFRGLRAFKSKFQPHWEPRYL
AASGSVGVFFTLADLSLLAGGRRS