Protein Info for BPHYT_RS10875 in Burkholderia phytofirmans PsJN

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1016 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 333 to 351 (19 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 435 to 460 (26 residues), see Phobius details amino acids 465 to 485 (21 residues), see Phobius details amino acids 520 to 541 (22 residues), see Phobius details amino acids 853 to 873 (21 residues), see Phobius details amino acids 879 to 900 (22 residues), see Phobius details amino acids 906 to 927 (22 residues), see Phobius details amino acids 956 to 975 (20 residues), see Phobius details amino acids 984 to 1007 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 13 to 1008 (996 residues), 761.9 bits, see alignment E=5.1e-233

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2193)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T4T2 at UniProt or InterPro

Protein Sequence (1016 amino acids)

>BPHYT_RS10875 transporter (Burkholderia phytofirmans PsJN)
MNFGQWMQKHRRSLLFVIALLAIAGALTAFRLPISLFPNVAFPRAVVSLDAGDRPAEQMA
TLVTMPVEEALRRVPNVRDVESTTSRGAAEISLNFDWGTDMAQATLQAQSAISEILATLP
QGTSMQVRRMDPTVFPVLAYSLTSQQQSLSALHDLAQFQMRPLLSSVEGVARVDVTGGAQ
DEFEVAIDPARLAAYKLSLADVSKAIGASNVLMANGRIEDHYKLYLVIANTTITRLDELR
NVVVSAGGATQIRLGDIATVREGVVPQRMRVTADGQDAVLINVYQQPGANSVAIAKAIRA
KLADFQHQMPAGVHLSNWYDQSELVIASATSVRDAIMIGVVLAALTLFAFLRNWKITAIA
VALVPVVMAATILLLDVFGMGFNIMTLGGMAAAVGLVIDDAIVMIEHIVRRMRDGGARAF
HGRVMAAALEFTRPLAGSSAATLIIFVPLAFLSGVTGAFFKALSVTMASALFISFLVTWL
AVPILCDRWLKPKDAEEHQETRFAAWMNRRYAFLVERVTARPVLVLLGLLPLIVVAAFAF
TRVGSGFMPSMDEGGFVLDYHTEPGTSVTETDRLMKQIEGIVRANPNVATYSRRTGAGLG
GDLNEPNKGDFFVRLKSGKREPIDAVMEEIRSKVETQVPGVSIELAQLMEDLIGDLTAVP
QPVQIKIYSDDPNTLETTARKVAAQIGKIQGVVDMNDGINPAGDALELHIRPEAAAAEGM
DPQSIAQAVSDMVEGNVATQFQSGPKTVGVRVRVAGAMKLTDTQLGQLQIRAPDGHLFAL
DRVADQVTVTGQPEISRDNLKRMVAVTARIDGRDLGSTIADVQKTLSDKTLLPSGVYYEL
GGLYQQQQIAFKGLLNVFGAAIALVFGLLLFLYERFRVALAVMAMPLLAAGAVFVGLWIT
GIELNISAMMGMTMIIGIVTEVAIFHVSELQGLVRDDEMPFEEALLSAGRNRLRPIAMTT
IAAILALLPLAFALGQGSAMQQPLAIAIISGLIVQLPLVLLLLPVLLKLLMKKEAI