Protein Info for BPHYT_RS10775 in Burkholderia phytofirmans PsJN

Annotation: copper resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF04234: CopC" amino acids 20 to 114 (95 residues), 77 bits, see alignment E=1.9e-25

Best Hits

KEGG orthology group: K07156, (no description) (inferred from 99% identity to bpy:Bphyt_2173)

Predicted SEED Role

"Uncharacterized protein, homolog of Cu resistance protein CopC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T4R2 at UniProt or InterPro

Protein Sequence (115 amino acids)

>BPHYT_RS10775 copper resistance protein (Burkholderia phytofirmans PsJN)
MAKLAALFAALAFASAAFAHVFPQKQEPGAGATVASPAQVRVMFDGPLEAAFSSLTVTDA
SGKQVNTEKATVDEHQRALITVPLPTLAAGHYTVHWVAVASDGHRTHGDYAFNVK