Protein Info for BPHYT_RS10075 in Burkholderia phytofirmans PsJN

Annotation: alcohol dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00034: Cytochrom_C" amino acids 28 to 137 (110 residues), 22.8 bits, see alignment E=2e-08 amino acids 196 to 295 (100 residues), 21.8 bits, see alignment E=3.9e-08 amino acids 327 to 412 (86 residues), 50.4 bits, see alignment E=4.7e-17 PF13442: Cytochrome_CBB3" amino acids 325 to 408 (84 residues), 36.5 bits, see alignment E=5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2030)

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T4C6 at UniProt or InterPro

Protein Sequence (433 amino acids)

>BPHYT_RS10075 alcohol dehydrogenase (Burkholderia phytofirmans PsJN)
MTLGALASSYTAASAAPGSATSADTAQIARGAYLAKAADCAGCHTAAPRVVRPGTAPIPA
APFAGGLGMASPFGTINSSNITPDPQAGIGLYSYDDFAHALRDGVARGGKRLYPAMPYPS
FAKIDDDDMHALYAYFMHGVRPVATPAPPTRLPFPFNQRWALMFWDWAFVPGERFKPEAG
RDAQWNRGAYLVQSLGHCGACHTPRGPAYEERGYTEASPLYLTGGTNDHWFAPNLTADTG
SGLGRSSAEDIAAFLKHGHGGGLVTFGSMVQVVEDSTQYLDDADLAAIATYLKSLPPRAQ
SGHFNAGSRGALQSVEALKTGELERPGAGIYATYCARCHQSDGAGVPQKYPRLAGNPAVL
APQTTSLVRLLVEGGGSPNTDGGPEPRKMPAFADKLTDSELAHVLTFIRNTWGNAAEPVT
TRDVSAVRHALHK