Protein Info for BPHYT_RS09780 in Burkholderia phytofirmans PsJN

Annotation: polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 83 to 109 (27 residues), see Phobius details amino acids 126 to 149 (24 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 223 to 241 (19 residues), see Phobius details amino acids 304 to 327 (24 residues), see Phobius details amino acids 332 to 359 (28 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details amino acids 422 to 440 (19 residues), see Phobius details amino acids 446 to 470 (25 residues), see Phobius details PF01943: Polysacc_synt" amino acids 5 to 287 (283 residues), 57.4 bits, see alignment E=1.6e-19 PF13440: Polysacc_synt_3" amino acids 33 to 331 (299 residues), 49.2 bits, see alignment E=4.7e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1969)

Predicted SEED Role

"FIG00468008: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T466 at UniProt or InterPro

Protein Sequence (488 amino acids)

>BPHYT_RS09780 polysaccharide biosynthesis protein (Burkholderia phytofirmans PsJN)
MDKGILKNVAINFFGLVLPTFVSLVTVPSYIKLLGVERYGVISLVWTLIGYFGILDLGMS
MAAQNHISKARASGDKEESARVFWSATWLNLATGVIGGLIIYFGAFLYTAYFTKVSPELQ
HEVYMALPWLAVAIPIANVSWVFAGAINGAERFGVYNTNQTIGTFLFQLLPLGAALWMGA
TLQNVLAAAVFARIVAALLLGRSALKVLEIRRILPPQFGVAKGLFNFGGWMLIASVTTMI
ADSLDRVMLGTSLGARFVTYYTVPQNLVTRLNIVPTALVRTLFPRLSAVGRADADTITQQ
SLEFLNGVFTPVALVAMLVLEPFLHLWVGNEIATVAAPVGRIMIVAVWLVGQANVTRILI
QSQVNPATAARVGLFELPLFAGALWFGITRFGLTGAAVAVAGRALFDYAVLLRLSAIRAK
QIALDMLAHLAFLLASLWLASFLPGLAMAIVAGVLMVGANVAWSITMTPALRDLARSLLL
RLNPRKSA