Protein Info for BPHYT_RS09250 in Burkholderia phytofirmans PsJN

Annotation: cell envelope biogenesis protein AsmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 832 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 739 to 755 (17 residues), see Phobius details PF05170: AsmA" amino acids 10 to 671 (662 residues), 425.3 bits, see alignment E=5.3e-131 PF13502: AsmA_2" amino acids 529 to 700 (172 residues), 44.7 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: K07290, hypothetical protein (inferred from 100% identity to bpy:Bphyt_1865)

Predicted SEED Role

"exported protein, conserved"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T3W2 at UniProt or InterPro

Protein Sequence (832 amino acids)

>BPHYT_RS09250 cell envelope biogenesis protein AsmA (Burkholderia phytofirmans PsJN)
MAVSSTTGRRIGKIIAWLLAIIVILIVALTIFILTFDWNRARPYINDKVTQAIGRPFAIN
GDLKVGWRHPVGETGWRGWVPWPRFSAANITVGNPDWTKQPHFATLDEIDFQVKVLPLLA
HDIVIPTINLVNPSVDLERVLDGRNNWTFKLASSSGPSEWKLDLHDIAFAKGNIALSDQQ
KKVDLQMAVDTLGQPIPIGEAMKQQEAASRSSSAQTIGKSGANKLTQQANAQAASEAAAA
SAAAASGASSTEISASGTTAATGASGGLVAGGSRGASEAVAAGASGAVVASAPASSASGA
SDAQAGAKQEIPPYAIGWTVKGTYNKTPVSGSGKVGGVLALQDANRPFPVQADVKAGDLH
VGLVGTITDPAHLAAVDLRLWLQGNSMARLYSLTGVTLPDTPPYATEGRLVGQFKSSGNV
FKYENFTGRVGGSDINGSLTYTAREPRPLLQGELVSHLLQFSDLAPVIGADSNASKAKRG
DATAQPSNKVLPVEEFRTDRWKAIDADVKFTGRRIVKDVNLPITDLYTHVVMTDGVLSLE
PLKFGVAGGSLASDIHLDGSATPLKGRFATSARHLKLKQLFPNFKTMQNALGEINGDAAL
TATGNSPAALAASSNGEVKALVTDGTVSRLLMEAAGLNVANVVYEKLFGNRDVKINCAAA
DFVATNGVLESRVFALDTDDAVINIDGNVNLRDESMDLGVHPHTKGFRVFSLRSPLYVKG
TFKDPHVGVNAAALALRGGAAVGLGLINPFAALIPLLAPSNNKPLPCTQMLEQIRQAPTA
PPPGVKQQPKAAISLDGAPVNKSSGGASSPAATDKKKPAVMSPASAATYKGS