Protein Info for BPHYT_RS09020 in Burkholderia phytofirmans PsJN

Annotation: UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 76 to 93 (18 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 171 to 188 (18 residues), see Phobius details amino acids 195 to 226 (32 residues), see Phobius details amino acids 235 to 259 (25 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 320 to 338 (19 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 373 to 395 (23 residues), see Phobius details amino acids 416 to 437 (22 residues), see Phobius details amino acids 446 to 469 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1819)

Predicted SEED Role

"Probable inner membrane transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T3R6 at UniProt or InterPro

Protein Sequence (585 amino acids)

>BPHYT_RS09020 UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase (Burkholderia phytofirmans PsJN)
MRPVVRLTASATSALPRWLLLTICIVYASFGLFGRDPWKNEDAAGFGVMWTMANGGAHDW
LLPNLVGKYLTEDGPLGYWFGASAIRLLAPWVDASNASRVFTGLMFCAGCAFVWYAAYLL
GRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILLACFGLAERGHETTPQLAQFFGIAML
VYGLVRMIDKPIQGALIWGLAIALVTLASSPVLVGALLLGTLAMTLIVRETRSRWLLLAG
LPVALVLSVAWPIAALAAFPVDAVWYLNQWVHVSLSSFAGPPGSVAGYALKNLPLFTWPA
WPLALWAWFSWSGLRRAPHVAIPLSVIGPLFVLVVLQSHQSNRLYMLLLPPLAVLAAFAL
PTLKRGAINAIDWFALLSFTILGSFVWLVYIAGLTGFPHPLARNLARLAPGFAPQFKILS
FVCAVAVTVCWFVLVQWRLARHPKVLWRSVVLSSAGTTLMWVLLMTLWLPVVNYSRTYKD
VAEQIAAHLPDDYTCISPVRLGNAQIATFAYFGDMHFSFDQDCDVILRQDTQDYGEPSAM
SDFVWKLVWEGRRVADRDERFRLYVRIDRPKPPVVKRRSWHKKSD