Protein Info for BPHYT_RS08210 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details transmembrane" amino acids 382 to 396 (15 residues), see Phobius details amino acids 529 to 551 (23 residues), see Phobius details amino acids 557 to 577 (21 residues), see Phobius details PF13400: Tad" amino acids 30 to 75 (46 residues), 37.1 bits, see alignment 3.2e-13 PF09977: Tad_C" amino acids 72 to 157 (86 residues), 68.6 bits, see alignment E=8.2e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1660)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T3A9 at UniProt or InterPro

Protein Sequence (596 amino acids)

>BPHYT_RS08210 membrane protein (Burkholderia phytofirmans PsJN)
MRRLSFAMRRAACRAHPLRMRCAGARRQHGAVAVVAVIWLSVAIAALGALDVGNVFFARR
QLQRTADLAALAAVQMIGSTGGCATATTAAQQNAAANGFTAGGTTSINTTCGRWDTSKST
YFGTSGNPLNAVQVTTTQVVPYFFLGPSRNVSATATAFASNIDAFSLGTGIASINTQQSA
LLNAILGGLLKTSVSLSVGDTQSLATAHIKLQDLMVALGASTMQGLLGTTVSFQQLMVAM
VTALQAGGDTINASILQKVAVAIPGGQNITIGDGGASSPGLLALGLANPNAAATATVNAF
DALLVAAQIAERSPDGTQGNAPVINVAAGLAGVAGISLQVIKPPVLAVGEGGMLPNGTYR
TMARTAVVNASVNLLPLTFAPISLNLGIGSISISALSTPIMLSLTSAQGTAALSSVDCES
TKAATNATILVQPSIATVCVGANSTCGGTINVAEVTVWTLLTGTNELTKIAINGTGQLPL
APPSPQPVTFNGASGSFDSSVTVNSNAVGSDASTLTAQLLKVLPNTLQVTALGLNLTGVI
QPLLSALAPVLSAALQPVFALLDAVLVPTLALLGVQVGTATVHNMSLTCGVSQLVN