Protein Info for BPHYT_RS08045 in Burkholderia phytofirmans PsJN

Annotation: condensin subunit ScpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF04079: SMC_ScpB" amino acids 10 to 167 (158 residues), 167.6 bits, see alignment E=8.4e-54 TIGR00281: segregation and condensation protein B" amino acids 11 to 169 (159 residues), 109.9 bits, see alignment E=5.6e-36

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 100% identity to bpy:Bphyt_1628)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T377 at UniProt or InterPro

Protein Sequence (394 amino acids)

>BPHYT_RS08045 condensin subunit ScpB (Burkholderia phytofirmans PsJN)
MNTQEAKIVLETALICAQEPLKLGELRKLFADGVSADTVRTLLEDLKQDWSGRGVELVGL
ASGWRFQSKPAMRSYLDRLHPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQ
VVKQLEDRGWIEVIGHRDVPGRPALYATTRQFLDDLGLTALDELPPLADPSAQLNADLLG
QHAIEFADAEVAQVSAAEEEQADSAVVVEAGEFVSATADGESENIPQATNEAPQSDSVEA
AGHAVDSALEAAGEASGTEIADELAEEHQAQHAEPVKSAQPADSVVEVASQNASASSEAH
ADAAATPAAQEHAETANPANVVPQTGVAESAENHDPVSQADPAIPAHDSGVLRNTEHAAE
PNPTKAAHGDPLDRRDAAQDAGILTDDEPESRSA