Protein Info for BPHYT_RS07965 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 851 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 69 to 85 (17 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 117 to 134 (18 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 402 to 420 (19 residues), see Phobius details amino acids 425 to 443 (19 residues), see Phobius details amino acids 450 to 468 (19 residues), see Phobius details amino acids 473 to 483 (11 residues), see Phobius details amino acids 487 to 512 (26 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details PF12805: FUSC-like" amino acids 69 to 351 (283 residues), 279.4 bits, see alignment E=4.2e-87 PF04632: FUSC" amino acids 401 to 478 (78 residues), 36 bits, see alignment E=5.4e-13 PF13515: FUSC_2" amino acids 414 to 535 (122 residues), 80.7 bits, see alignment E=1.5e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T358 at UniProt or InterPro

Protein Sequence (851 amino acids)

>BPHYT_RS07965 hypothetical protein (Burkholderia phytofirmans PsJN)
MRYSVEIKKFLYSQYFYGGLRIAVGVSLPAVLCLIVFHNRELGFTIATGALGACVVDMPG
PLKYKHNEMLACTVIGFLSALATGLATVNAVALWCTVVPLTFLLSLIVVYGNRWPQISFA
TLFMMIMTLEEHFTPMQALVNASWILVGGLWYTYWSTFVSRWMMHRIEQQALAESVFACA
DYLLARAEFYDLDNDLDECYRNLVDKQITAVERQDAARDIVLRNLPRFKSGKLEPRRAML
FNLFINTVDLHELFVGAHTDYPLVRTTFGGSDLLVFYRDLIRKAAADLEEIGLAVLQNHA
PRGRVNVKAELRAIEFEIELMRKQDLPAKNHEAYSAISSTFRRVWSATRLIDKMRKSLSS
EPSTSETELRLDQALTRFVSSRRVPFGQIFSNLTMASPSFRHALRVTIAVAVGFWLGRLL
PLTNAYWIVMTTVIILKPGYSLTKQRNGQRIVGTLIGCAASIALMIFVKEPHILLVVMFA
SMVMSYSLLLFNYTASVVFTSSYVLLMFHLLAPGSMRIIGERAIDTVVGCAIAIAASHLF
PYWEYRLMGKLVNNMINATRQYLEASWWWSGKPAAAVVATVTEAGARAPAAAMADPAIDF
GKPVLAASGGARGGSDSVASGHAGAGAGGSANGDANGAVSAAASASVDATTKPFADAGAS
AGTTTVSNPTAKPVSGASAAAAAAAIALDRDYRYRLARKNVHVAFANLGQAFQRMMLEPK
SAQKFVPELNGLLVRSHVLASQITAAAPLLRTSAQQQVDGVSLQPLQRALSVVRDNLTEA
ETGTAPAADQSEQIKLLGRELDAMVVETEKSPDYTADAVHDMKLLAHQCKQMLSAAAQIR
KDASVIRLPDE