Protein Info for BPHYT_RS07820 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 TIGR00229: PAS domain S-box protein" amino acids 133 to 254 (122 residues), 63.7 bits, see alignment E=1.8e-21 PF13188: PAS_8" amino acids 144 to 185 (42 residues), 15.7 bits, see alignment 2.8e-06 PF08448: PAS_4" amino acids 148 to 253 (106 residues), 37.3 bits, see alignment E=7.1e-13 PF00989: PAS" amino acids 148 to 249 (102 residues), 38.2 bits, see alignment E=3.3e-13 PF13426: PAS_9" amino acids 149 to 251 (103 residues), 49.9 bits, see alignment E=8.4e-17 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 261 to 422 (162 residues), 165.4 bits, see alignment E=9.6e-53 PF00990: GGDEF" amino acids 265 to 419 (155 residues), 151.1 bits, see alignment E=5.9e-48

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1583)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T333 at UniProt or InterPro

Protein Sequence (432 amino acids)

>BPHYT_RS07820 hypothetical protein (Burkholderia phytofirmans PsJN)
MVNPDTSDLESEYEALLSFMYLSPVGIIRSDLAGFVDMLNPLAAQLLMPLVKDGGIENIF
DSLASVAPELRNLVASFEGERGAVCENHRVFVTPARDGAVVLACSIIKVGANLLMTVLTD
ISRQVAAERRARQTESWLAGIYTSVNDFAFFSLDAEGRIESWNPSVERLTGFDETDVVGH
TLSRFYARDEIVLHRSPEHIALTRDEGWHVEEFWCDTKTGRRYWGQVLIAVLREEGDDIS
GYSVVLRDVTERKVSSDNLARLLTTDHLTGVSSRAHFFEIAEAEVARAERHGRALSVVML
DADYFKRINDTAGHQAGDEVLKRIAGEAKGLLRTSDTVARLGGEEFILMLPSTTTSEAVA
VAERLRVAVERARIDTAVGTLKATVSLGVATVSTANPTLQSLLAAADRALYDAKRAGRNC
VRGEMLNSMDVS