Protein Info for BPHYT_RS07200 in Burkholderia phytofirmans PsJN

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 PF00165: HTH_AraC" amino acids 233 to 272 (40 residues), 28.5 bits, see alignment 2e-10 PF12833: HTH_18" amino acids 246 to 324 (79 residues), 70.1 bits, see alignment E=2.5e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1458)

Predicted SEED Role

"Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2R2 at UniProt or InterPro

Protein Sequence (331 amino acids)

>BPHYT_RS07200 AraC family transcriptional regulator (Burkholderia phytofirmans PsJN)
MPHMHLDTARITWLHTPTLNVRSATRRIGVLLFDGFWLLGPGTVVEMFQTANELSGSRAG
EEQPYEVQFLSMDGGSVASSSSARIWTDRIDARFAGGFDVLFIAGGYGAHVAARDERVLG
WLRSVQSRTRAIETIGEGRLVLEAAGPTDSDGPQVNRYLSSVTGESALNASNDRNDCARS
ALMFIKRDLGAELARSVADRVMPGMAATWVPLPVEGGTLSVAEKIRAAARWMEANCDRPV
SVADAAQVAAMSERNFLRRFKHEMQVTPSDYLLQVRLRIACNFLTETELPVDKIARRSGT
GNGDRLAKIFRKRMALSPTEYRARSRVASEA