Protein Info for BPHYT_RS07165 in Burkholderia phytofirmans PsJN

Annotation: peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 transmembrane" amino acids 41 to 62 (22 residues), see Phobius details amino acids 164 to 190 (27 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 224 to 244 (21 residues), see Phobius details amino acids 283 to 308 (26 residues), see Phobius details amino acids 328 to 350 (23 residues), see Phobius details PF12911: OppC_N" amino acids 27 to 64 (38 residues), 34.6 bits, see alignment 1.4e-12 PF00528: BPD_transp_1" amino acids 180 to 362 (183 residues), 112.3 bits, see alignment E=2.4e-36

Best Hits

Swiss-Prot: 52% identical to YEJE_ECOLI: Inner membrane ABC transporter permease protein YejE (yejE) from Escherichia coli (strain K12)

KEGG orthology group: K13895, microcin C transport system permease protein (inferred from 100% identity to bpy:Bphyt_1450)

MetaCyc: 52% identical to putative oligopeptide ABC transporter membrane subunit YejE (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2Q4 at UniProt or InterPro

Protein Sequence (371 amino acids)

>BPHYT_RS07165 peptide ABC transporter permease (Burkholderia phytofirmans PsJN)
MSSSTPASNSTARTADAAGAAHAASPSPWRRTWLRFRRQRLGYWSLVIFVSLFAISLLGE
VLSNDRPLLVRYDGHYYFPIVKDYPETLFGGDFPARANYLDPYIRSRLESNGNFAIYPPN
HFHYDTIDYFAAHPYPAPPTASNWLGTDQFGRDVLARLLYGFRLSVLMALALTVSGVVVG
VLTGAVQGFYGGRTDLIGQRLIEIWSSMPDLYLLIIFASIFEPTLWLLFILLSMFGWLVL
SDYVRAEFLRNRSLDYVKAARTMGLTNWQIMWRHVLPNSLTPVITFLPFRMSAAILSLTS
LDFLGLGVPPPTPSLGELLQEGKNNLDAWWISMSAFAALVITLLLLTFMGDALRNALDTR
SRGSAFGGGPR