Protein Info for BPHYT_RS07110 in Burkholderia phytofirmans PsJN

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 54 to 78 (25 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 117 to 142 (26 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details amino acids 277 to 300 (24 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 334 to 358 (25 residues), see Phobius details amino acids 372 to 394 (23 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 19 to 420 (402 residues), 74.4 bits, see alignment E=8.7e-25 PF07690: MFS_1" amino acids 23 to 387 (365 residues), 84.5 bits, see alignment E=7e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1437)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2P1 at UniProt or InterPro

Protein Sequence (437 amino acids)

>BPHYT_RS07110 LysR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MNREQDDHAAGRQPTRAAAAAFVGTTIEWYDFYIYATASALIFGKLFFPGSDPFFATLAS
FGTFAVGFFARPFGGLVFGHLGDRIGRKKALVATLAIMGVGTVGIGFLPTYASAGVWAPV
LLVLLRVAQGIAIGGEWGGAVLMASEHAPQGRRTFFASFAQLGSPAGLILSLLAFRAVAS
MDKDAFLGWGWRLPFLASAVLLVVGLLIRAGVDESPEFKALKAQRRVAALPVAEVVRDAW
RTLLLCLGANVIGVAGAWFVNTFMLNYTTQTLGLDRSLILDCLFVVAFIQLFTQLGSGWF
AQRIGTGRFLKGAAALAMLSPYPMFALVSTGRPVAIVIGIALAVMCMSSSYAVMAGFMST
AFPVRVRYSAISLSYQVCAALAGGLTPLIGTLLAHRYPGAWWPLAVFYSVLAGVSLVCIG
TLERRKRGAAHGVVEAA