Protein Info for BPHYT_RS06515 in Burkholderia phytofirmans PsJN

Annotation: GDP-mannose-dependent alpha-mannosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 PF13439: Glyco_transf_4" amino acids 14 to 165 (152 residues), 86.1 bits, see alignment E=7.3e-28 PF13579: Glyco_trans_4_4" amino acids 16 to 153 (138 residues), 34.8 bits, see alignment E=5.3e-12 PF00534: Glycos_transf_1" amino acids 170 to 289 (120 residues), 67.4 bits, see alignment E=3e-22 PF13692: Glyco_trans_1_4" amino acids 179 to 297 (119 residues), 61.7 bits, see alignment E=2.5e-20 PF20706: GT4-conflict" amino acids 233 to 320 (88 residues), 35 bits, see alignment E=2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1322)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2C6 at UniProt or InterPro

Protein Sequence (343 amino acids)

>BPHYT_RS06515 GDP-mannose-dependent alpha-mannosyltransferase (Burkholderia phytofirmans PsJN)
MKIMIVTDAWEPQVNGVVRTLKNTTRELSALGHHVDLLTPLEFKTIPCPTYPEIRLSLLP
RRKLRERIDAFSPDALHIATEGPLGMAARAYAIQHKLPFTTAYHTRFPEYVQARFGIPLA
ATYKFLHWFHKPSLAVMAPTPVVKADLEKFGFTNVVLWTRGVDLDIFHQMDSKVLNSARP
IFLYVGRVAVEKNVEAFLKLDLPGSKWVAGEGPALAELKSRYPQANYLGVLTQAELAKVY
AAADVFVFPSRTDTFGLVLLEALACGTPVAAYPVTGPIDVLGDGGAGAMHEDLREACLEA
LKIDRNHARAWAERFSWAAASEQFAAHLKPLPRASYREESAAA