Protein Info for BPHYT_RS06210 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF07366: SnoaL" amino acids 54 to 177 (124 residues), 138.9 bits, see alignment E=8.1e-45 PF12680: SnoaL_2" amino acids 55 to 163 (109 residues), 56.8 bits, see alignment E=3e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1261)

Predicted SEED Role

"Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T265 at UniProt or InterPro

Protein Sequence (182 amino acids)

>BPHYT_RS06210 hypothetical protein (Burkholderia phytofirmans PsJN)
MSTSSLSRIARHMLVAASFAGALSAHAASDADLPVPHHVAVASNSAQSAEVVLTARRYAA
FWNTGDNAYAKLALSPAFIDRTLPDGRPQGPDGPLQASKGFRAAVPDLHAEIDDLVVAGD
RASVHLHFHGHFTGQFQDLKGSGQTVDFQAFDLYRVKDGRIVENWHLEDNLTLLKQLGAI
KP