Protein Info for BPHYT_RS06115 in Burkholderia phytofirmans PsJN

Annotation: cell division protein FtsK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1485 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 78 to 102 (25 residues), see Phobius details amino acids 110 to 124 (15 residues), see Phobius details amino acids 315 to 331 (17 residues), see Phobius details PF17854: FtsK_alpha" amino acids 996 to 1096 (101 residues), 90.5 bits, see alignment 1e-29 PF01580: FtsK_SpoIIIE" amino acids 1104 to 1313 (210 residues), 267 bits, see alignment E=1.8e-83 PF09397: FtsK_gamma" amino acids 1420 to 1480 (61 residues), 87.4 bits, see alignment (E = 6.3e-29)

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T247 at UniProt or InterPro

Protein Sequence (1485 amino acids)

>BPHYT_RS06115 cell division protein FtsK (Burkholderia phytofirmans PsJN)
MHTVVFGWFGGSAVWFIPLLWRLVKSALPGGAGLRGPGTIRLWLGFVCVLVASCTLEASL
IAVAGVNGFGRALAAGFGHLLGHIGTPLAALALFFISLPWLIDFRWRDFAAWADGAFGLG
LSRGLAKRDEEARRHRSVDDGLQSHVSPAANTMAPKTNGRYTRPTVWRPPARGRDAAAAG
AAASVAGKDAAARGAAPSWRTGATTPRSHAKQAEPVLRTGAATTSPRHVPMQTPPLKAEK
AAWMPAEPVAPAGWLRESGSRVAVPGAGSVAGSVAGSVAGSAGATGVAGASGASARVGAS
QVGRRSAGEQRPVGSAGAGAGLAAGGAFAAGAAGAAGKVTQAAVHTSATARALSGSAGSH
SAVGSVGTAAAGAGRPSTMAQGAAASAASVNRAPAPRQAFSPAPGSNDVAPTPAASRLAP
SYTRPMPATQKVTPPASVQETLRSIAENAARWTDIAGVSLARSTGSENAKLTSAPNAAPS
FEPEQPIVDVPRTDATEAALTPDAHRPSLEVVDSAPVDHAINAPADAPRVEASFEVPPEV
SHEPVVQWPIEPPVIQPPLTAAPVVERAPVAEHAPVAASASTPTPTPTHASVSASASASA
PFVEQAPIAEPAPAPAPALASSSSSSSSSSPSSSPASPYVPPVATPTPFQIFAAQLQASE
AHEDEPPFEDNPTVSTTHADHYASPSIETAQTLSQPAHHSEVIAPRVGEQTTAPAMAEQV
KEAASFVEPQPAAAASAAEVVIDKTLAPWEAELDAVLAQHAASSSSVPAVSRVVVSSGTG
PTPDAAMPSLSIARAGESATPVETETADAPALSDVPEASDSPTAAHAANLTAAMPPQHVA
PHVSETSATAHAANISTAATPQSTAPQTSDSSANEHASNPPIAVPPQSHAPQASNVVRFP
GFAVQTAPVASDVADDESFAIAERPNEAAMPPPAPITSTSLAAPFTTEKTPSAEATAATA
ATEPTEPAAQPRPPLRGHSPANGFEFRAPAASMVELPTLDLLAPADIDVEPVSEEKLIET
GLLIEQRLQEFKVPVTVVGASAGPVITRFEVEPALGVRGSQIVGLMKDLSRGLGLTSIRV
VETIPGKTCMGLELPNAKRQTIRLSEILEASVYQNSHSQLTLAMGKDITGHPVVADLAKA
PHMLVAGTTGSGKSVAINAMICSLLYKATPEEVRLIMIDPKMLELSVYEGIPHLLAPVVT
DMKLAANALNWCVGEMEKRYRLMSAVGVRNLAGFNQKIRDTEAKGKKLGNPFSLTPEAPE
PLAPLPLIVVVIDELADLMMVAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLI
KANIPTRVAFQVSSKIDSRTILDQMGAESLLGQGDMLFLPPGTGYPQRVHGAFVADEEVH
RIVEYLKQFGEPQYEEGILDGPATDGGAAQDLFGESPDAEADPLYDEAVAFVVRTRRASI
SSVQRQLRIGYNRAARLVEQMETAGLVSAMGINGSREVLAPGPAE