Protein Info for BPHYT_RS06050 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 89 to 92 (4 residues), see Phobius details amino acids 106 to 107 (2 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 163 to 180 (18 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 220 to 243 (24 residues), see Phobius details amino acids 309 to 332 (24 residues), see Phobius details amino acids 338 to 357 (20 residues), see Phobius details amino acids 368 to 393 (26 residues), see Phobius details PF03594: BenE" amino acids 24 to 400 (377 residues), 522.1 bits, see alignment E=3.9e-161 TIGR00843: benzoate transporter" amino acids 28 to 401 (374 residues), 429.8 bits, see alignment E=4.8e-133

Best Hits

Swiss-Prot: 44% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 100% identity to bpy:Bphyt_1229)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T230 at UniProt or InterPro

Protein Sequence (406 amino acids)

>BPHYT_RS06050 membrane protein (Burkholderia phytofirmans PsJN)
MSPSSTPDLSPAVTPPGRLNPFADTSLSAIVAGFVAMMTGYTSSLVLMFQAGQAAHLSDA
QISSWIWALSIGMAVCTIGLSLRFRAPIVIAWSTPGAALLVSSLPHVAYAEAIGAFIVCA
LLLTLVGLTGWFDTLMKKIPAGIASALLAGILFEIGIEIFRAAQFQTALVLTMFFTYLIV
KRLAPRYAIVTTLIVGTAAAGGLGLLDFSRFHVALAHPVFTMPVFSVAASVSIGIPLFVV
AMASQNVPGIAVLRADGYTTPSAPLISTTGIASLLLAPFGSHGINLAAITAAICTGPEAH
ENRNKRYMAAVWCGIFYLIAGVFGATIAALFAALPKALVVSVAALALFGSIMSGLANAMQ
DMKQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQVVLNARRA