Protein Info for BPHYT_RS06035 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 43 to 59 (17 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 95 to 112 (18 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details PF04632: FUSC" amino acids 17 to 340 (324 residues), 72 bits, see alignment E=4.4e-24 PF13515: FUSC_2" amino acids 31 to 157 (127 residues), 49.6 bits, see alignment E=4.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1226)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T234 at UniProt or InterPro

Protein Sequence (356 amino acids)

>BPHYT_RS06035 membrane protein (Burkholderia phytofirmans PsJN)
MVRAVTSPYYRYRHAKVLHSLRVGLAMLVSILATTGIDIPHGIWSSVTLLVVIGGLQHHG
NIRKKAAERAAGTLLGASIGLTLIVLQNLTDSPPLTYVLMSIVAGICAWFAIGSSGYIGL
LTAITMCIVAGHGDNQIDVGLWRTANVLIGIVIALAFSFALPLHATYSWRYGLAMNLREC
ARIYTRLLEGEMISEEEQVRRFLAINKRLVQLRSLMPSVAKEIEVPQSKLEEIQRLHRSV
LSSLELLATGPLMQADATARAAYAEQCGVEVRAVRATLLAMARGLRFGRATHFGIPSASA
LAQRHGDAALKLPPEFQGPYWLGQRLAEQVDRLRERLLETEPNWNIERRARPLLKA