Protein Info for BPHYT_RS05995 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 PF13432: TPR_16" amino acids 21 to 61 (41 residues), 18.5 bits, see alignment 1e-06 amino acids 65 to 114 (50 residues), 23.9 bits, see alignment 2e-08 PF14559: TPR_19" amino acids 27 to 87 (61 residues), 26.9 bits, see alignment 2.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1219)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T223 at UniProt or InterPro

Protein Sequence (604 amino acids)

>BPHYT_RS05995 hypothetical protein (Burkholderia phytofirmans PsJN)
MHEHEFPFPTSVSNDLGAMTAHADACFAAGRHHEAIADYQRVLAEQPHNVHALHRLGLAL
FCVDRPDRSREHFDQALNVAPERADIWEHRGLIAALDGELIAAEAFYYRAVGLGGGTVSL
HRNLGDCLTLSERLVEARGHYLKALELEPTLHHAVRSLARIGTELERYQDAADYWLRAWA
LDPTHLPDALDLITALSRAQRGERIDSVLAELRVRFASDASAFQQVAFAFNNAERFSDAI
SVAIEALGVDPRNGWLHHNASFAFNMLGDFPAMHAHAAEAARLMPDHPLMQFNLAAAQLR
AGDYENGWKQYRWHEALPENHDLVRPAYPEWQGERVTGRRFLLVGEQGLGDQLQFLCMAD
WLNKRGAQVDVWVEAPLGEVARSAAGVRAAWTTAPPGPYDYWCRMLSMPEPMKLDLPMLP
LATSYLRAEPAQVQRWRSRLDAICAADTREAPAKRVGIVWAGNPAYELDRYRSIPLRHWL
PVLQQTGVHWFALQKGETQNEAASCADLSMHSLGPEIGTFADTLAIVQSLDLVITVDTAV
AHLAGACGTPVWVLVPTFTDWRWLTERDDSPWYPSARLFRQRELGRWDTVLDEVAQALHD
FVAG