Protein Info for BPHYT_RS05960 in Burkholderia phytofirmans PsJN

Annotation: endoribonuclease L-PSP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 PF14588: YjgF_endoribonc" amino acids 10 to 153 (144 residues), 99.3 bits, see alignment E=2.5e-32 PF01042: Ribonuc_L-PSP" amino acids 22 to 153 (132 residues), 55.1 bits, see alignment E=7.9e-19

Best Hits

Swiss-Prot: 50% identical to TCP17_TRYCR: Protein TCP17 (TCP17) from Trypanosoma cruzi

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1212)

Predicted SEED Role

"RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T216 at UniProt or InterPro

Protein Sequence (154 amino acids)

>BPHYT_RS05960 endoribonuclease L-PSP (Burkholderia phytofirmans PsJN)
MAQTNVYDKLKELGIELPTAGAPAAAYVMSAQSGNTVYLSGHIAKKDGKVWTGKLGATLT
TEEGKAAARSIAIDLLATLHAHVGDLNRVTRIVKLMSLVNSTLEFTEQHLVTNGASELVA
DVFGERGKHARSAFGVAQIPLGACVEIEMIAEVE