Protein Info for BPHYT_RS05820 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 632 PF12708: Pectate_lyase_3" amino acids 202 to 252 (51 residues), 33.7 bits, see alignment 1.6e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1183)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1Y8 at UniProt or InterPro

Protein Sequence (632 amino acids)

>BPHYT_RS05820 hypothetical protein (Burkholderia phytofirmans PsJN)
MSKVTFPLTGHQYSDDGSTDRDMLDGGHTEYLLPMLQETVDTARSAIDARASALASASQA
SDHAQATAHDAVIVAQDRQAAEAAAAAAHADAATVNIPLLTGNAGRMLGVAEDGASMAWV
DMSPYTQDADLASPDKGVRMVAHAVDDRDLADPEKGVSMVAHAADDRLIAAPGGASLVGF
KGALAGSVARTVADDLNDGYANPKRFGAKGNGSADDTAAIQAAIDVLAAAGGGVIRFPNG
NYFCNVVLKDGVHLVSGAEHFGYLAQVDGPIAGVTLSQAAPGFVVDTPATLKRGVLSVKG
INFQGLGAAYAGGGVRFQGTRWGAIKCCSANGFADQAFLHRNGWGVVFEDLLATNCLLGA
ARTSVVGVLETHGTDDFINRVEMAGQSAASVTDANLFRAAIAVYGANSFLSNAVGEQADR
GIYIGPQSGAGHRMALCRGDSNGGVGFWIDGNVIGSVCTAYNNSLAGSGLYSGFYASATS
SGCKFSSCRSDGHDATIPQKYGYEDYVSNSNANVRNSYIDCGGFYNASGLFLTQGFLGSG
VVNPPQAIRPADGTTIVDVTGTSLVVFAGYATATTVTNFTGGAEGDTIRVLGDAQVTIAN
GSGINTPTNAAVALADKTMYTFTQYNGVWYMG