Protein Info for BPHYT_RS05805 in Burkholderia phytofirmans PsJN

Annotation: prophage tail length tape measure

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1707 transmembrane" amino acids 354 to 377 (24 residues), see Phobius details amino acids 1102 to 1120 (19 residues), see Phobius details amino acids 1132 to 1153 (22 residues), see Phobius details amino acids 1158 to 1179 (22 residues), see Phobius details PF06791: TMP_2" amino acids 301 to 493 (193 residues), 116.9 bits, see alignment E=5.4e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1180)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1Y5 at UniProt or InterPro

Protein Sequence (1707 amino acids)

>BPHYT_RS05805 prophage tail length tape measure (Burkholderia phytofirmans PsJN)
MGASAGAINVTLTLDSTQYLAELTESQNRTVTTAAQIGAALSAGSFGAKDLAAAMQAASA
SGAGLASSTTLLADAEAQAAARIRDMVARSLEAQQAMVQLSAASQSAASSANTMGASADQ
VRANVTAQTQSMIDAQRATVAMNDEMQALRSTLAQGGSSFATIGDQYARLDRAMATGKLS
MQEYDAALAAIGKDEDARSKSLAALTAKYDPLGAATRRLEADQALLEDAFKSGAVSAADY
ERALNGIKADQASIGLRQLAQQEAQLEASFRSGALASADFRRAMADIATSRQALTSVATG
AQAAGAAVEGFGLKTAGARREVIVLAHEAATGSWSNFGGSLMVLAERMDLMEVATSGAGL
AVAAIAAPILLAGAAMYKVSEQNAAMNEALVLTGDYAGVTTEELRGMAQAATAGGATFDT
AAEAVTALAATGRLTGQEIADLGRTTADAATYTSISVKQMVDDFTRLAEDPVKASVALND
QYHYLTASTYDQIAALEKQGDATGAAQIAVEAFSKAMDERTGEIARNEGIILAGWRDIKS
MINGAIEAVGSFGATAGPAEVVARMLANKQARNPLGTWDADDEADLQKAIAARDAAVKTA
RDKASQSEQQQQLIDAKRWYATWNEQFATPAEKRVKAVNEYLDKTAALNLSPEQQLADEQ
KINDKDKDKTGRKGGTGLVDRAELTGEVQAVKDALAQELSAVDGARKVLDSQYKGGALSI
TDYYTLDRNLLAQAATDHIDAATKEAALIVQGMNNRNLSAVQRAQLANQERKALADGGKA
VEDFFQKVAQSAAQEDEVWDKYGKSQLDAMQKQIDSANQQQQSLRDQIDTFGMTKAAIDD
LKASRADDTVAALEQGRAIALLQGNLADTKSWDEAIAKAKSLSNALHGVASDQATLDDLA
QAKKQQDDLVKSWQSTIDGIGTDFHNGFLQMLTDGKNGWSSFTKSLKNTFETTVVDELYK
SFAKPFVVSVIAQIAGIAGGSGVQNSILQNNGMGGGNGTLNNLLSNPYGTYNNLSNGYNT
VMGWIQGYGGASTALGASAIAGASTGALSGGGVLLGGLGGGIGGDVAASAGGYASALGSN
AYGFTAGEAGSGLGSTLGSSGGLMYGGAGLLGGLAGGALFGNKGYSNLGGSLGAMGGLAI
GASSAVAGTAIGASLGSLAGPIGAVVGMVLGSLVGSFIGGGETRYGADYTIDSNDNITKV
RGPSGGDPAATDVQASIKNTYDSIKSLASQLGGSIDGLGQYSATYEISPKKGNSFVAAGF
GDLNTDVNRQDLNGVKDSTTVLNDFSLQLQRSVIDSLQKANLDTPYAAVLQGVDASKLSA
DDITSLLSELNSLKSLFDSIQKMGDDFTNLKNASVDAQTAVLSLAGGVDSFNTSATYFYQ
HFTSAAQQANDASKSVTDQLAALGYSGIHTRDQFRNLVESLDLSTAAGQQAYVSLLALAP
AFDNVVSSYESAVASAYSTQSQALQSFRDQVDQFRQSLTTGDLSTASPEQQYAETRQRFE
DLYGKAIGGDATAQAGLTSAAQDFLNASKAYNASSGQYQSDLAEVMQSMDYASSSADAQL
DQLKEMVKGIVDVNTSVQTVAEAIASLQAWTSVNGSHASGLYRVPFDGYIAELHAGERVL
TANEARSLDARLPTMQTVDFTRYRSSANDPLLQELKALREQNAKQAEAIAKLLAAQLQQA
DAIARDGSEKMDQQTAVLQQQRRPGQQ