Protein Info for BPHYT_RS05765 in Burkholderia phytofirmans PsJN

Annotation: portal protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 371 to 393 (23 residues), see Phobius details PF05136: Phage_portal_2" amino acids 40 to 369 (330 residues), 329 bits, see alignment E=2e-102 TIGR01539: phage portal protein, lambda family" amino acids 42 to 455 (414 residues), 259.2 bits, see alignment E=3.1e-81

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1172)

Predicted SEED Role

"Phage portal protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1X7 at UniProt or InterPro

Protein Sequence (489 amino acids)

>BPHYT_RS05765 portal protein (Burkholderia phytofirmans PsJN)
MKTNFIDRAIEYVAPGIAARRMRARVSIHAARGFDGAKRGPRSAGWRASGASSTAEVLPA
LGVLRNRARDLVRNNPHIRRALKILVANAIGTGVQAKFTDKALQKLWKRWVKVCDAGGLL
DFYGLQAQAYKALKESGEVLLRFRTRLPQDGMEVPLQLQILEIDFLDTLKVGAVDGGFIV
AGVQFNMIGQRTGYWLFDQHPGEVAQVPRNMLSRFVPASEIIHLFDAIDRPNAVRGFPWL
ASAIWKARDLDEYQDAELVRKKIEACFAAFVTSSDEGFQVGRTTASAPGDSRRVESLSPG
MVEYLRPGETVDFSAPATSNDYEGNVRVDLRAIAAGTDTTYEQLTGDYSQVNFTSGRMGK
MEFKRFLEQDLWLIFIPMFCEAVASRFVSTAYLAGRTKQPLADVSWSPQRIEFIDPLREA
NGIIALIDARLKSRHQSIRDLGEDPDEVDAEINADPLAIEVPISGRSLDAKSAHDVLDRL
EQILSAVPQ