Protein Info for BPHYT_RS05115 in Burkholderia phytofirmans PsJN

Annotation: NADH-ubiquinone oxidoreductase subunit 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details PF01266: DAO" amino acids 15 to 51 (37 residues), 31.7 bits, see alignment 1.9e-11 PF13450: NAD_binding_8" amino acids 18 to 87 (70 residues), 56.7 bits, see alignment E=3.6e-19 PF01593: Amino_oxidase" amino acids 23 to 298 (276 residues), 64.5 bits, see alignment E=1.8e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1045)

Predicted SEED Role

"COG2907: Amine oxidase, flavin-containing"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1A7 at UniProt or InterPro

Protein Sequence (433 amino acids)

>BPHYT_RS05115 NADH-ubiquinone oxidoreductase subunit 6 (Burkholderia phytofirmans PsJN)
MPHSAPTSPLPRGSRVAVIGAGISGLASAYLLARHHRVTLFESAAYLGGHTNTVDVTLDG
HTHPVDTGFLVFNDRTYPNLIALFAELGVQSHPSDMTFSVSLDEGRLEWAGTSLNTVFAQ
RRNLFSPTFIGMLRDIMRFNGSAQRNLELAIATRASMGELLTEGGYGGAFQRQYLLPMAA
AIWSSATADILAFPATTFLRFCLNHALLQVNRRPQWRTVVGGGREYVKRITSTLDDVRIG
TAVRGVRRDTDGVDVFTDHGSERFDALVLATHAPTTLRLLQDADQDERGVLAAVRYQPNV
AVLHTDTNLLPRRQRVWSAWNYLGSRSADGTHPVCVSYLVNQLQPLPFRTPLVVTLNPVT
QPAPGTELRRFVYDHPLFDLAAIDAQHRLPSLQGKRRTWFAGAWTGYGFHEDGLKSALRV
AADFDASPAWARL