Protein Info for BPHYT_RS05080 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 24 to 43 (20 residues), see Phobius details PF03548: LolA" amino acids 90 to 234 (145 residues), 138.2 bits, see alignment E=1.1e-44

Best Hits

Swiss-Prot: 66% identical to LOLA_CUPNH: Outer-membrane lipoprotein carrier protein (lolA) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)

KEGG orthology group: K03634, outer membrane lipoprotein carrier protein (inferred from 100% identity to bpy:Bphyt_1039)

Predicted SEED Role

"Outer membrane lipoprotein carrier protein LolA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1A1 at UniProt or InterPro

Protein Sequence (244 amino acids)

>BPHYT_RS05080 membrane protein (Burkholderia phytofirmans PsJN)
MQLFAQKYARENAQPGRIGQLARTLVRGVGSVAIGASVLFASQAFASGTEQLKAFVAQVH
SARGTFVQQEVRAPSKAQGASGTLSTQGAGKTGTSSGTFTFARPGKFIWQYEKPYAQLLQ
ADGDKLYVYDKDLNQVTVRSLGGALGASPAAILFGSNDLDKNFTLRDAGVKAGIDWLELT
PKAKDTQFQRVGIGFKDGNLEAMELHDVFGNVTLLTFSNIQKNPPLPADAFKFTVPKGAD
VING