Protein Info for BPHYT_RS05035 in Burkholderia phytofirmans PsJN

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 186 to 212 (27 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 251 to 274 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 96 to 271 (176 residues), 54.6 bits, see alignment E=6e-19

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 99% identity to bxe:Bxe_A3449)

Predicted SEED Role

"ABC-type sugar transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T189 at UniProt or InterPro

Protein Sequence (285 amino acids)

>BPHYT_RS05035 sugar ABC transporter permease (Burkholderia phytofirmans PsJN)
MQPKMTISRAVIYAALFLFALYFLFPLYVMLSTSFKDIDQLRTGNLLTPPTHWTIDPWIK
AWSGACTGVRCDGMQPFFMNSVRMVIPAVLISSIIGAFNGYVLTHWRFRGADPIFTMILV
GCFIPFQAILLPMARFEGFLGLSNTTTGLVVVHVIYGIAFTTMFFRNFYVSIPAELVKAA
RIDGAGFFTIFTKILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV
NTSTGVKEYNVDMAGAIIAALPTLLVYIIAGRYFVRGLTAGAVKG