Protein Info for BPHYT_RS04950 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1443 transmembrane" amino acids 37 to 62 (26 residues), see Phobius details amino acids 1417 to 1434 (18 residues), see Phobius details PF04357: TamB" amino acids 1096 to 1438 (343 residues), 161.9 bits, see alignment E=1.4e-51

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T176 at UniProt or InterPro

Protein Sequence (1443 amino acids)

>BPHYT_RS04950 hypothetical protein (Burkholderia phytofirmans PsJN)
MTTDVSTQPPVQPPGANPPGEPPGQQPPPRRRLGWLLLKTVAWMVAVLTLLLALAVGLLY
GALTTERGTAYAWQAAVKLLGGKLSGTLERGALVHGVELRQVRWRSLDGSGTDIQIDRVT
GRWALAREPWRLTIDYLRIGTVDARIGSSSSSSSGPVKLPQDLRLPMQLDVRDVQVDKLL
LHQGASTTEFSRLVFHGRSDGRHHEAAIERLDTPFGAVTAAAKLDGVRPFPLSGDIGYSG
KVNDEAVQVGGHLSGSLENLIAELDASGMKLTGHARVEATPFGDVPLQRATLTFDHINPQ
AFAPGAPMADLAVRAELQPVGRGAAGEVVLGATGAASQSALTSASASKSAGTTQPPAATN
GKSTSQPAATFAVTGHVSIVNAKPGAIDQNLLPLIDANADVRLDAQAQRISNLVVRLVKN
ATLTGGGTLSGKRGQFDLQVANLDLNALQATVRPTQLSGPIGVRLNDDVQSLTLDLADPK
AALRAQGKVTFDPARTSFNDVRITSGKGRIDLSGALKHDANSTYNLKAQLTDFDPLTLTS
QMPSRKPVAEAAPAASREKNSKTAQAAAAQAGSTAGAKSAAPAEKAAAAVKNTAKAAVKT
EVVERKTPPPKKRGAPPARKIEARVTGTLTAAGMLGPVFTTKAEFKLGPSVYDGLPLTGG
GTIQLAGSRILPSRANLSVAGNQVDLQGSFGARGDRLKFRVDAPALERLGFGLAGLIAAD
GDVTGSFAHPNVVLNYKADSVVFSSNRIGHAEGHAELRDGANGALVFTTDARNLSAGGVD
LTTLTAHLSGTRGNHTLEAAATGKLQDRPLDLTLAANGKLTEARDGTRWDGTVTRLQNRG
TPALNLESPLAVSAGPDRLTLGATRLTLEGAVLSLKSFVFDHGKIQSAGSLTGISVARLQ
DLRREITGEPPHVKTDLVFDGDWDFALGSTATGHIQLQRRSGDVTVEIGRGLASLGISSI
AARAEFSGGNRLNATLHAQASRIGVIDADAHTTLVMRDGFLTVSEDGALTGNVNANVPSL
KTTGGLFGPSYLLDGHLALKLALGGTVAKPNLTGSLLGDGLSATMVDQGVQLKDGVVRIA
LSHNLVDFQQVEFHGASGTLRATGRVRLDGDQPDLTASIVADKLELFAAPDRNLSLSGSA
SVANAGAQGGMAINGKFVVDHALFDMPEQAAPKLGDDVVVVRPDGSVAGERPRPVPGTNK
PIGPFAPRANIDISLGNNFRFRGQGADLGLTGTITAMSAPNLPLRAVGNVRVTPGSTYTA
FGRKLNIENGFFTFNGPVANPGINILAMRRNQQVEAGVQVTGTVQFPTAKLVSEPNVPDN
EKLSWLLFGHGTDQGNNLGQQSTMTTALALLGSASGKRIAQTFGLDEFSVGQSEVGLTDP
QVVMVSKAINEWLVIGYEQGLQSASNAIKATVNLTRYWSVGAYGGTFTGVELFYTRRFDR
IRW