Protein Info for BPHYT_RS04600 in Burkholderia phytofirmans PsJN

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 PF05947: T6SS_TssF" amino acids 1 to 626 (626 residues), 764.7 bits, see alignment E=3.8e-234 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 627 (623 residues), 640.5 bits, see alignment E=1.9e-196

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 100% identity to bpy:Bphyt_0946)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T108 at UniProt or InterPro

Protein Sequence (629 amino acids)

>BPHYT_RS04600 type VI secretion protein (Burkholderia phytofirmans PsJN)
MDPRLLDYYNQELMYVRELAGEFAQLHPKIARRLGMQAGEMTDPYVERLIESFSFMAARM
QLKLDAEFPRFTGRLLEVIYPNYVAPTPSMAVARFYPSPSEGNLVEGFPVRRGSMLTGKK
SPGENTLCEFRTGQDVALYPLEITHAQLTGIPPDIPMLDRYVPPHTQVRGALRLRLRSTG
DAKIAELRGLDRLPVYLAGDEQVASHLFELLHAAGVASITGEPGRFGDAARPFCAVTHGA
VAHEGLGVDQGLLPLTWSKFHGHNLLHEYFACPSRFYFFTLTGLREGLSKAKGHEVEIVV
LLDQSPDRLIGLVDASRFALFCTPVINLFPRKAQRIELNQASTEFHLVPKRSAPLDYEVY
SVEALTAQVGKNSTEFAFRPLYQTLNNDEGNHGRYFSLRRERRLLSDSARRYGTRTPYIG
TEVFVSLVDQQEAPYHEGMRYLSIDAWLTNRDLPNLLPRNGVDDLDAVDSVPAISVGLIR
APSAPRAPFAERETAWRLIRQLNFNYLPLEDMDHRPGGQGVRDMLRLFLTGDDVGPRRQV
ESLVGVKTRPVARKLPGGGPLVFGRGIECQLTVDETGFSGLSPYLFGVILEHYLARHVSI
NSFTQTELHSMQRGQLMRWPVRMGTRGVA